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How Exactly UMAP Works

Towards Data Science

This is the twelfth post in the column Mathematical Statistics and Machine Learning for Life Sciences where I try to cover analytical techniques common for Bioinformatics, Biomedicine, Genetics etc…

How to Program UMAP from Scratch

Towards Data Science

This is the thirteenth article of my column Mathematical Statistics and Machine Learning for Life Sciences where I try to explain some mysterious analytical techniques used in Bioinformatics…

UMAP for Data Integration

Towards Data Science

This is the twentieth article from the column Mathematical Statistics and Machine Learning for Life Sciences where I try to explain some mysterious analytical techniques used in Bioinformatics and…

Why UMAP is Superior over tSNE

Towards Data Science

This is the fourteenth post from the Mathematical Statistics and Machine Learning for Life Sciences column, where I try to explain in a simple way some mysterious analytical techniques used in…

On the Validating UMAP Embeddings

Towards Data Science

There is not a large body of practical work on validating Uniform Manifold Approximation and Projection (UMAP). In this blog post, I will show you a real example, in hopes to provide an additional…

How to Analyze 100-Dimensional Data with UMAP in Breathtakingly Beautiful Ways

Towards Data Science

Learn to reduce dimensionality and visualize 100-dimensional datasets with UMAP by creating point clouds and connectivity plots and really "see" your data.

UMAP Variance Explained

Towards Data Science

A simple way to interpret UMAP components Continue reading on Towards Data Science

Integrating Omics using UMAP and Clustering

Towards Data Science

Life science is driven by data these days. You may have heard the words genomics, transcriptomics, proteomics, even if you are not a biologist or medical researcher. The omics are scientific…

UMAP Dimensionality Reduction — An Incredibly Robust Machine Learning Algorithm

Towards Data Science

How does Uniform Manifold Approximation and Projection (UMAP) work, and how to use it in Python

PU Learning

Towards Data Science

A challenge that keeps presenting itself at work is one of not having a labelled negative class in the context of needing to train a binary classifier. Typically, the issue is paired with horribly…

tSNE vs. UMAP: Global Structure

Towards Data Science

This is the fifteenth article from the column Mathematical Statistics and Machine Learning for Life Sciences where I try to explain some mysterious analytical techniques used in Bioinformatics and…

Umlizer lives!

Daniel Roy Greenfeld Blog

Umlizer lives! June 15, 2008 This was originally posted on blogger here . Still is an early alpha release but nevertheless it lives! At this moment it currently handles all the formats I want for vers...