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UMAP
UMAP, or Uniform Manifold Approximation and Projection, is a powerful dimensionality reduction algorithm widely used in data science and machine learning. It excels at visualizing high-dimensional data by projecting it into lower-dimensional spaces, typically 2D or 3D, while preserving the underlying structure of the data. UMAP operates by first learning the manifold structure of the data in high-dimensional space and then finding a low-dimensional representation. This technique is particularly useful for clustering, visualization, and outlier detection, making it a popular choice for analyzing complex datasets across various fields, including biology and social sciences.
Biologists, stop putting UMAP plots in your papers
The UMAP craze in singe cell RNA-Seq Single-cell RNA sequencing (scRNA-seq) has become one of the most widely used technologies in basic biology. With the rise of scRNA-seq, the use of UMAP has becom...
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UMAP Dimensionality Reduction — An Incredibly Robust Machine Learning Algorithm
How does Uniform Manifold Approximation and Projection (UMAP) work, and how to use it in Python
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On the Validating UMAP Embeddings
There is not a large body of practical work on validating Uniform Manifold Approximation and Projection (UMAP). In this blog post, I will show you a real example, in hopes to provide an additional…
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How to Analyze 100-Dimensional Data with UMAP in Breathtakingly Beautiful Ways
Learn to reduce dimensionality and visualize 100-dimensional datasets with UMAP by creating point clouds and connectivity plots and really "see" your data.
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How to Use UMAP For Much Faster And Effective Outlier Detection
Let’s catch those high-dimensional outliers Continue reading on Towards Data Science
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The AiEdge+: T-SNE and UMAP - Dimensionality Reduction
If you want to impress your friends at Data Science dinner parties with beautiful plots, t-SNE and UMAP are the way to go! These are significant dimensionality reduction techniques widely used in data...
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Nmap
Nmap (Network Mapper) is a free, open-source utility for analyzing network security. It is a popular tool for ethical hacking and is used for network discovery and security auditing. With Nmap, a cybe...
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The New AI Gold Rush (Pan Provided!)
UMAP is short-changed as being characterized as a dimensionality reduction manifold learning technique. While being technically correct, it is better characterized as a transdimensional manifold…
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Why you should not rely on t-SNE, UMAP or TriMAP
Dimensionality reduction techniques such as t-SNE¹, UMAP², and TriMap³ are ubiquitous within the field of data science, and given their impressive visual performance (combined with ease of use), they…...
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How Exactly UMAP Works
This is the twelfth post in the column Mathematical Statistics and Machine Learning for Life Sciences where I try to cover analytical techniques common for Bioinformatics, Biomedicine, Genetics etc…
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How to Program UMAP from Scratch
This is the thirteenth article of my column Mathematical Statistics and Machine Learning for Life Sciences where I try to explain some mysterious analytical techniques used in Bioinformatics…
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Why UMAP is Superior over tSNE
This is the fourteenth post from the Mathematical Statistics and Machine Learning for Life Sciences column, where I try to explain in a simple way some mysterious analytical techniques used in…
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